Protein Info for AMB_RS11590 in Magnetospirillum magneticum AMB-1

Annotation: radical SAM protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 PF14559: TPR_19" amino acids 53 to 117 (65 residues), 38.4 bits, see alignment E=4.5e-13 PF13432: TPR_16" amino acids 83 to 138 (56 residues), 30.6 bits, see alignment 1.4e-10 PF04055: Radical_SAM" amino acids 158 to 293 (136 residues), 60.7 bits, see alignment E=7.4e-20 PF13186: SPASM" amino acids 364 to 432 (69 residues), 38.6 bits, see alignment E=3.7e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb2292)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W4X9 at UniProt or InterPro

Protein Sequence (436 amino acids)

>AMB_RS11590 radical SAM protein (Magnetospirillum magneticum AMB-1)
MKPPKKKIKPVDPAHALAQALRLADGQLLDEAIAALAKADGHPECDYRRAGLLLMRQRPT
EAEALFRRVLSAVPGHLDTMVGLAGALVEQGRPAESLPLLEAAALVQPQSGRIHYLLGIA
LDEAGRGAEAAPHLAKARALIIAPAERRQLVPYELYVQLSRRCNLRCTMCGWEIWKDNSG
FMEDAVFERVIAEGKACGIKTMHILAGQGEPFLHPRVFEMLERAVAEGFQVGIVTNGTPF
TPDKIARLAKVGLAYLQFSFAGWDAESYEGVYVGSKFERTMVNLKAIHKALKDTPTRFAV
KAVALGDWQDNLRRTKAFLASQGITDVWTVPANNFGGSVQCGTFHESHGVWSLKNIGPHR
LMPCRLFLKAVGVFCDGTVTACGCYDSNAQLKIGNIMEQGLGDIRRGPAYGAILEAFRRG
DVRHVPMCGKCDDPFG