Protein Info for AMB_RS11565 in Magnetospirillum magneticum AMB-1

Annotation: AEC family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 307 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 37 to 56 (20 residues), see Phobius details amino acids 62 to 86 (25 residues), see Phobius details amino acids 96 to 119 (24 residues), see Phobius details amino acids 190 to 209 (20 residues), see Phobius details amino acids 218 to 241 (24 residues), see Phobius details amino acids 253 to 273 (21 residues), see Phobius details amino acids 284 to 303 (20 residues), see Phobius details PF03547: Mem_trans" amino acids 156 to 303 (148 residues), 36.1 bits, see alignment E=1.5e-13

Best Hits

KEGG orthology group: K07088, (no description) (inferred from 100% identity to mag:amb2287)

Predicted SEED Role

"FIG00779197: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W4Y4 at UniProt or InterPro

Protein Sequence (307 amino acids)

>AMB_RS11565 AEC family transporter (Magnetospirillum magneticum AMB-1)
MTLPFDTALALKLVPLYLLMGIGFLLGRFCEVKGQDLGRLALFVLSPAVVFKGFVTADLK
GALLVLPFAVFGLCSLVALLTAPVAGGLWKDGRERIAAFTSGTGNTGFFGIPACLALVGP
DSLPYVVMVSFGATAYENSVGFYTVARAEASVTGAILRVLKYPGLHACWLGAALNLTGTR
VPIPAMQAVDLLSGGFVPVGMMIVGLGLAQVRSLRIDLGFTAFTFALKFALWPMLALGFI
WADRGWLHVFGRVGHQVLLIESLVPLAAVTVVHASLRNIHPDRAAIAVAVSTLFALVWLP
VVYSRVF