Protein Info for AMB_RS11470 in Magnetospirillum magneticum AMB-1

Annotation: homospermidine synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 transmembrane" amino acids 10 to 25 (16 residues), see Phobius details PF03435: Sacchrp_dh_NADP" amino acids 11 to 143 (133 residues), 112.8 bits, see alignment E=1.5e-36 PF16653: Sacchrp_dh_C" amino acids 152 to 432 (281 residues), 121.7 bits, see alignment E=6.1e-39

Best Hits

Swiss-Prot: 56% identical to HSS_RHILO: Homospermidine synthase (hss) from Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)

KEGG orthology group: K00808, homospermidine synthase [EC: 2.5.1.44] (inferred from 100% identity to mag:amb2266)

Predicted SEED Role

"homospermidine synthase"

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.5.1.44

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W505 at UniProt or InterPro

Protein Sequence (467 amino acids)

>AMB_RS11470 homospermidine synthase (Magnetospirillum magneticum AMB-1)
MRTIVFKGRLVIIGCGSIGQGILPLILRHIEIKPAQITIITACERGREVAAEYGIEFTNK
ALTKDDFRDRLTPMLRKGDFLLNLSVDVSSTALVELCRDLGVLYQDTCIEPWAGGYTDPS
LSPSLRSNYALREEMLRLRVDAPVPTALVTHGANPGLVSHFVKQALLNIAADTGLGADVP
KDRRGWGELASRLGVKVIHVAERDTQQGTTPKGPDEFVNTWSIDGFVGEGCQPAELGWGT
HEKELPPDGRRHDFGSDAAIYLMKPGASQKVRTWTPVEGAFHGFLITHNESISIADYFTV
KEQGRVTYRPTVHYAYHPCDAAVLSLHELAGKNWTMPSRQRLMVKELVSGIDELGVLIAG
HAKGAYWYGSQLSIAEARELAPHNSATSLQVTSTVLAGMIWALENPMMGIVEPDEIDFQR
ILEIARPYLGPVVGVYTDWTPLEGRGALFAEDLDISDPWQFKNVRVV