Protein Info for AMB_RS11455 in Magnetospirillum magneticum AMB-1

Annotation: GIY-YIG nuclease family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 94 PF01541: GIY-YIG" amino acids 4 to 70 (67 residues), 44.9 bits, see alignment E=5.9e-16

Best Hits

Swiss-Prot: 46% identical to Y776_NATPD: UPF0213 protein NP_0776A (NP_0776A) from Natronomonas pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / NBRC 14720 / NCIMB 2260 / Gabara)

KEGG orthology group: K07461, putative endonuclease (inferred from 45% identity to tra:Trad_2033)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (94 amino acids)

>AMB_RS11455 GIY-YIG nuclease family protein (Magnetospirillum magneticum AMB-1)
MKDWFVYVLLNGADVAYTGIALDVEDRLARHNAGEGAKFTRGRGPWRLIHQEGPLPHGDA
LRREAAIKRDAAFKRALKLRFGFKQAPKLRSGAA