Protein Info for AMB_RS10945 in Magnetospirillum magneticum AMB-1

Annotation: diguanylate phosphodiesterase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 396 PF00072: Response_reg" amino acids 11 to 122 (112 residues), 35.1 bits, see alignment E=1.3e-12 PF00563: EAL" amino acids 151 to 385 (235 residues), 218.5 bits, see alignment E=8.8e-69

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb2166)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W5A5 at UniProt or InterPro

Protein Sequence (396 amino acids)

>AMB_RS10945 diguanylate phosphodiesterase (Magnetospirillum magneticum AMB-1)
MARINGAKPKVLILDDERDMCEFVADVGADMEFSTTWCDNFEDFACRYSIDLRGIFLDLA
MPGMDGVEIIRFLADNKSGANLVLMSGYDSDVIEAARRLAESRGLKVAGVLHKPFGVGDL
SAVYDRLAAIQAPCPPSAVEKAPDRYRPDTEALGNALDDGHVVPWFQAKFCAKTRKILGA
EVLARWIHPEHGMVGPDRFIGLAERDGMIDRLTDSMFRQALAQCGEWRKAGLSPKVALNL
SPHMLLNLDLPDALVDMARDYGVPPEQITIEITETALAGDFTSQLDILTRLRMRRFGLSI
DDFGTGYSSLKQLQQGPFTELKVDQSFIARAMIEEGARAIVESSIALGHRLGLKVVAEGI
ETEEQMRLVADLGCEEVQGFLLARPCAAQSFVWPTS