Protein Info for AMB_RS10890 in Magnetospirillum magneticum AMB-1
Annotation: hypothetical protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 60% identical to Y6755_BRADU: UPF0229 protein bll6755 (bll6755) from Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)
KEGG orthology group: K09786, hypothetical protein (inferred from 100% identity to mag:amb2154)Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q2W5B7 at UniProt or InterPro
Protein Sequence (440 amino acids)
>AMB_RS10890 hypothetical protein (Magnetospirillum magneticum AMB-1) MMNIIDRRLNPKGKSLANRQRFLRRARAQIVKAVRDASGTRSIQDINNGEKISIPADGLR EPSFRRSGDGGVRDVVVPGNKDFVEGDRIKKPEQQSGDDGGSEGSPDGEGEDDFAFVLSR DEFLDIFLDDLELPDLVKKKLKQTESTTPTRAGYSVTGSPANLNIVRTMRNSLSRRIALN RPKPKELRDLEDEIKALAESGEDPERLSLLRVEFDRLAAKARRIPYIDPLDVRYSRFEHV PKPVTQAVMFCLMDVSGSMTEHMKDLAKRFFMLLYLFLTRRYRHVDVVFIRHTHEAAEVD EDTFFYSTETGGTVVSTALEEMDRVIKERFPPSDWNIYCAQASDGDNTSSDNAKTAGLLE EVILPVTQYFAYIEVGAEYKDWLGRDSDLWRTYKEAGRAADNFAMRRVRVRSQIFPVFRD LFSRERGDSAAWRLGEEAGP