Protein Info for AMB_RS10570 in Magnetospirillum magneticum AMB-1

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 258 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 26 to 30 (5 residues), see Phobius details amino acids 50 to 71 (22 residues), see Phobius details amino acids 85 to 96 (12 residues), see Phobius details amino acids 98 to 107 (10 residues), see Phobius details amino acids 147 to 174 (28 residues), see Phobius details amino acids 197 to 220 (24 residues), see Phobius details amino acids 232 to 256 (25 residues), see Phobius details TIGR00056: ABC transport permease subunit" amino acids 27 to 256 (230 residues), 249.6 bits, see alignment E=2e-78 PF02405: MlaE" amino acids 44 to 253 (210 residues), 266.8 bits, see alignment E=6.7e-84

Best Hits

Swiss-Prot: 63% identical to Y080_RICFE: Probable ABC transporter permease protein RF_0080 (RF_0080) from Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)

KEGG orthology group: K02066, putative ABC transport system permease protein (inferred from 100% identity to mag:amb2094)

Predicted SEED Role

"ABC-type transport system involved in resistance to organic solvents, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W5H7 at UniProt or InterPro

Protein Sequence (258 amino acids)

>AMB_RS10570 ABC transporter permease (Magnetospirillum magneticum AMB-1)
MSNVLAPVGRVFLAFLAHVGRLSAFTAMAVSHTVRPPFYPRLILREFIEIGYFSLPVVGL
TAVFTGMVLALQSYSGFSRFAAEGAVATVVVLSVTRELAPVLAGLMVAGRIGASMAAEIG
TMRVTEQIDALTTLSTNPFKYLVAPRILAGTLMLPFLVLIADIIGVFGGYIVGVYKLGFN
SATYIARTWEFLEPLDVISGLTKAAVFGFLITLMGCYNGYYSKGGAQGVGAATTNAVVSA
AIMILVFNYVITAMFFGK