Protein Info for AMB_RS10210 in Magnetospirillum magneticum AMB-1

Annotation: xanthine and CO dehydrogenase maturation factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 346 PF02625: XdhC_CoxI" amino acids 27 to 88 (62 residues), 78.4 bits, see alignment E=3.1e-26 PF13478: XdhC_C" amino acids 196 to 334 (139 residues), 129 bits, see alignment E=1.5e-41

Best Hits

KEGG orthology group: K07402, xanthine dehydrogenase accessory factor (inferred from 100% identity to mag:amb2022)

Predicted SEED Role

"Carbon monoxide dehydrogenase F protein" in subsystem CO Dehydrogenase or Carbon monoxide dehydrogenase maturation factors

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W5P9 at UniProt or InterPro

Protein Sequence (346 amino acids)

>AMB_RS10210 xanthine and CO dehydrogenase maturation factor (Magnetospirillum magneticum AMB-1)
MCLDAIKCDPADMAADDCGVLATALKWMDEGRRVVMAVVMATWGSAPRSIGSYMAVDADG
TFAGSVSGGCVESAVISEARDLEPGEPPRQLSFGVEDETAWAVGLPCGGNIRVAVFHPER
DLLETAVRQQASRQPTALVLDLATGAQALVGDDDVGGSLSLDPQRLAAARTHLGQGTCGV
VADEIFIRTHEAPWTLIIAGAVHITQVLAGMARQTGFAVTVIDPRRAFADEARFPGTTLI
CGEPDEVMAGIALDRRTAVVSLTHVPRLDDAALRAALGSEAFYVGALGSTRTHAKRCQRL
EDLGPALKRIAAPVGCDIGARTPAEIAVSVLAELISARRGRPLRVR