Protein Info for AMB_RS10180 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 275 transmembrane" amino acids 20 to 37 (18 residues), see Phobius details amino acids 43 to 62 (20 residues), see Phobius details amino acids 83 to 100 (18 residues), see Phobius details amino acids 105 to 124 (20 residues), see Phobius details amino acids 138 to 158 (21 residues), see Phobius details amino acids 164 to 182 (19 residues), see Phobius details amino acids 213 to 238 (26 residues), see Phobius details

Best Hits

Predicted SEED Role

"Eukaryotic-type low-affinity urea transporter" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (275 amino acids)

>AMB_RS10180 hypothetical protein (Magnetospirillum magneticum AMB-1)
MRQMITARLQRSWDLRAAGNFIGGGAGTGLVLASVLLGDGGLSLVAGLALVGLGLAMVWL
EIGKPWRALNVFFHPQTSWMTREGIVAGPLMAVGGGYWLLGHPALLVPLVVLAAGFLYCQ
SRILRASRGIPAWKQAEIVPLIITSGLAEGAGLLALFAEPAPAVLAWALAAGLAREGAWM
LYRRGLVASGNASGALAIFGSGPAQAARMAQGLALALWLLALAGLPVAPLAGLLAAGSGW
GIKALLITRAAFTRGASVPYAPVRGRGLPMALGGR