Protein Info for AMB_RS09990 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 742 transmembrane" amino acids 601 to 628 (28 residues), see Phobius details amino acids 633 to 654 (22 residues), see Phobius details amino acids 713 to 737 (25 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1981)

Predicted SEED Role

"FIG00537905: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W5U0 at UniProt or InterPro

Protein Sequence (742 amino acids)

>AMB_RS09990 hypothetical protein (Magnetospirillum magneticum AMB-1)
MSGDGDSNQGPMQWKFFRAGGFDQVRLDSGRALMSLGSLDQKLWAALSCPTRGIELDQRT
LDIIDSDKDGRIRAGEVIAMVEWAGNLLKHPDLLLKREDALPLDAIDDAKPEGRAVLAAA
KRILAKSGKAGADTITLAEVAGVQEVFAANDFNGDGIVPAEIVEDPSLRSVIEDIIACLG
GETDRGGLPGVSEAKVKAFFQAAEAHAAWAAKAEADPDLNPVAGESAKAAEAVSAVSAKL
DDWFTRCALAAFDSRAAGPLNRSEEDWAGLAGHLLSDQSDELAAFPLALVGGGSDLPLGA
GLNPAWAAAMARFRAEVVVPLLGERDTLSAEDWHGIKRRFAARAAWAAEMPEGPVARLGT
ERIKAILSQDAQAAIESLIAQDLALEAEAKAIDSVDKLLRCCRDLAILLNNFVAFRDFYT
RKHRAVFQAGTLFLDGRSCDLCVRVEDPAKHAMIATLSRIYMVYCECRRRGAAEDGEKMY
IAAAVTDGDSDQLMVGRNGVFYDRKGVDWDATIVHIIDHPISIRQSFWAPYKKVGKMIGQ
MVEKAAAARAKAADEQVAAAAVSPKIPLPGAKPAPAPAPAPAAAAAAPAVPAAPFDAGRF
AGIFAALGLAIGAIGTALASVVTGFLALPWWQIPLALVGALLAVSGPSMIIASFKLHQRH
LGPILDANGWAVNTHARINIPFGTALTHLAKLPEGAQRSLKDPYAQKEPPWRSAVFAGVV
LAALALAWKLGWIAKLVALVHK