Protein Info for AMB_RS09825 in Magnetospirillum magneticum AMB-1

Annotation: ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1959 PF07714: PK_Tyr_Ser-Thr" amino acids 105 to 261 (157 residues), 57.3 bits, see alignment E=4.7e-19 PF00069: Pkinase" amino acids 115 to 267 (153 residues), 83.2 bits, see alignment 6.4e-27 PF13191: AAA_16" amino acids 303 to 491 (189 residues), 151.4 bits, see alignment E=1e-47 PF01590: GAF" amino acids 1321 to 1461 (141 residues), 45.7 bits, see alignment 3e-15 PF13185: GAF_2" amino acids 1322 to 1462 (141 residues), 36.1 bits, see alignment 2.2e-12 PF02518: HATPase_c" amino acids 1819 to 1951 (133 residues), 55.5 bits, see alignment 2.2e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1947)

Predicted SEED Role

"Signal transduction histidine kinase CheA (EC 2.7.3.-)" in subsystem Bacterial Chemotaxis or Flagellar motility or Two-component regulatory systems in Campylobacter (EC 2.7.3.-)

Isozymes

Compare fitness of predicted isozymes for: 2.7.3.-

Use Curated BLAST to search for 2.7.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W5X4 at UniProt or InterPro

Protein Sequence (1959 amino acids)

>AMB_RS09825 ATPase (Magnetospirillum magneticum AMB-1)
MSVPSEFKVADILCRDEETLLARGTAAGGRAVLLRSTSSARPSQPVIDRLRREFALRSEI
DAAWGAVPLSLDEVSGRLTLTLSDPGGVPLSQVIASRSGPLRMADVARLLRLSALLARTL
GRVHVKGLIHKDITPSNILIDEAGATVTFTGFGAASQLRREQRHNQGAESVCGTFAYMAP
EQTGRMNRSVDSRSDLYSLGVVLYEMFTGLRPFSAVDPMEWVHCHIARQPSPPHDRVAGL
PDQISAIIMKLLAKTAEERYQTAEGLASDLEACLAEWTTAGRISGFPLAGSDHSGILTIP
EHLYGRERESDILLAAFRRVADDGMPELVLVSGYSGVGKSALVNQIHPAMVERDGMFGAG
KFDQHKRDIPYSTFAQAFHTLIRQILGAPESDIRRWREAFLDAVGPNGGLLIDLIPQLEL
VVGEQPGVPELPPGEAQVRFLTVFRRFVSVLARPEQPLVLFLDDLQWMDNGSMKLLEHLM
THPEVRHLLLIGSYRDNEVDSSHPLMLSVETIRKGGRPVDDIVLKPLNEDDLGHLVADTL
RCAGERAAPLVRLIHQKTAGNPFFAIQFLSTLAEEKLLWFDQSKAEWRWDLGRIGDMGFS
DNVVILMAAKLRRLPEADQAELRRIACLGNGTTLGTLAMAYDRTEEECLGSLEKAIQAGF
LIRNGDRLSFTHDRIQEAAYLSLPIAEMVATHLQIGRRMLESLSAEEVDDRLFDVIHHLN
LGRQMITSQAERDLLAGLNIQAGRKAKASSANASARVYFTLARNLLGADCWDVAHDNTFA
LFLDLSECEYLVGNHAQADALFELLLGKAATDDQSAQVWRLRFRMFMVSGRFGDAVAVAV
KALERFGLACPETEEDTASAVQAARQELAGLLKGRHVADLVRLPECHVPAVRALIGLIAD
AIPAVYHVRPLLYPFLGLTAINLSLHHGVTEDSSAAFSGYSVSLVGRFEDFRTGLEFSEL
ALKLGERFDSAPLKGTLLFRHGYFVTPWSKPIASIMPVLEETFRTCLDTGNLIYAAYVAY
ASAWMLFEKGEPLDVVLAHMRKYTPFAANARIPFAILMLRLQELFIAGLQGVELDVKPGI
AGADSAENSYEALVATAHGYGIAFYHVVRQVTPYLMGRYEEALGAARETAALVPKISSSV
IETSHHFYGALAITALYPSAEPERREEMAPWLAEHHRKLALWAEHCPETFAARAALIDAE
MAALSGGGNEVMRLYERAILTAREHGQLHCEAIANERAGQFCLEQGLPSIAENYLRNARY
CYTRWGALAKVAQLDQNFPRLAEAALADGAMTSFSGSADGLDLMTVIKAQQAVSGEIVLG
KLVESLLRIVVEHAGADRGLLILRHGDSFRIEAEAVVEGDLIAVSTCAAPPTSDDLPLTV
FQYVARTRERVVIDNAIGPNTYMTEGYAARSGVKSVMCLPVVTHGALSAVLYLENRLAAG
AFTRKRVAVLDLLATQASISLENALLYTEMEERVRDRTRELAESLSAVKTKGDQVSALLD
NSGQGFLSFRGDLVVEPEFSHPCLTFFGGSPAGKPVDELLFSGNEHARDTLRACIEEALK
EHDTSRAELYLSLLPEEISIGRRVLKAEFKPLNRSIMVVLTDITGEKALAAQVARERTRL
EMIVSAVTYGNDFFDAVAEFTNFVQDGAGMWRGRDRAVLYRTIHTFKGTFNQLGFHHLPT
QLHDVESSLQRLGRRGDAAEAATMVFARDWQAVLNADLETVREALGDDFMARRGVVTVTP
EQAKRFERFARGLLSETDIPNVLEEIAAIRTVSLRQAIADFDKMIHQISARLEKEVAPLV
VEGDDVRIDPEVFGPFLRSLGHVFRNAIDHGIEDPDSRLSTGKSEIGTITCAIRRNNGAL
DIDIADDGAGIDVETLRRRAAELTSDDVSDWDIADLVFAEGISIRAEATELSGRGVGMTA
VKASVEELGGSIRIDSRPGHGTHFLFHIPFPPQVEGRAQ