Protein Info for AMB_RS09700 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 191 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 43 to 63 (21 residues), see Phobius details amino acids 118 to 138 (21 residues), see Phobius details amino acids 158 to 178 (21 residues), see Phobius details PF01292: Ni_hydr_CYTB" amino acids 3 to 189 (187 residues), 74.5 bits, see alignment E=9.8e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1922)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W5Z9 at UniProt or InterPro

Protein Sequence (191 amino acids)

>AMB_RS09700 hypothetical protein (Magnetospirillum magneticum AMB-1)
MKYDLLTKILHASIALGVSLQMITSLVMIYPKPGRVPNQWYEVHEWVGIALLGIVSIHWL
WAVGRTLIRGDALLLFPWFSGARLGQLGRDIAETGCEALRGRLPGGDEPRALPAAVQGLG
LLLALGMAVTGTALSMGMAPDGGLSPLLRVVKEIHESLAPVMWVYLLVHPLLGVLHQMAG
HRSLSRMFGPR