Protein Info for AMB_RS09690 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 174 PF02810: SEC-C" amino acids 16 to 31 (16 residues), 23.6 bits, see alignment (E = 3.9e-09) amino acids 156 to 173 (18 residues), 39.6 bits, see alignment (E = 3.7e-14) PF17775: YchJ_M-like" amino acids 40 to 140 (101 residues), 86 bits, see alignment E=2.7e-28

Best Hits

Swiss-Prot: 44% identical to Y1048_GEOSL: UPF0225 protein GSU1048 (GSU1048) from Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)

KEGG orthology group: K09858, SEC-C motif domain protein (inferred from 99% identity to mag:amb1920)

Predicted SEED Role

"UPF0225 protein YchJ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W601 at UniProt or InterPro

Protein Sequence (174 amino acids)

>AMB_RS09690 hypothetical protein (Magnetospirillum magneticum AMB-1)
MNQQTETSLTADSLSACPCGSGLAFDACCGPIVDGAPAPTAEALMRARYSAFVTRRIGDF
LLETLAPEKRGEFNLREVELSARDARGMGFDVRAVDGGGIDDDRGSVEYVARFKIRDQVQ
IHHEIATFRREDERWLYVDGRINPKAEPRQVSKVGRNDPCPCGSGLKFKKCCGG