Protein Info for AMB_RS09580 in Magnetospirillum magneticum AMB-1

Annotation: putative baseplate assembly protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1026 TIGR02243: putative baseplate assembly protein" amino acids 576 to 997 (422 residues), 160.4 bits, see alignment E=3.5e-51

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1896)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W625 at UniProt or InterPro

Protein Sequence (1026 amino acids)

>AMB_RS09580 putative baseplate assembly protein (Magnetospirillum magneticum AMB-1)
MADPVLDFRDFDTFYDQSVTLAKSYCQDWSRYWPENLDATVPLDPGLVMLKLFSLMAGYM
AGMENGVPHQRRLALYQFLAQPLRSPVQARAVLSFALRQGQPPRLVPAESAVVNSPGQSI
RFQTDRDLMVIPAQIIAVLALLPPQDQFVDVLGLLGAGQTAPLFVATETDPAEQPLPHWF
LMGDSLLFKPDSALQGLSVTLTGAQLYPEFFQQWTDGALTPLKSTCESNSEFTRLTITLT
ELPAAAPRSLAEVQAELYGAGGLPPGQQDAPPDDERGSPLYWLMVHPGPLMRVVKALSRQ
LPVITGATCRLTGDGIGVDMAADGTQQLDIANGAYPFGQSPALNDAFYLRSDSIFARQGA
MITLTLTLQPVTIDYPVQLLWQYWGDGQWQSFNASPTDCSQHQFRDDTNQLRGQSGQPVG
TVQFLCPTMTPTTVAGEQGLWIRVVIAEGGYGAMGTIVTQPVSVVINAVPDEILLPEQKA
AVSTYLNTVEGVNFSYTYTPSTYDPPFIVRASLGYEYIARPSQFWTYNNFTLTRFLFRPY
KPVDLNCASVLLGFDPADFAQSCLGRTLTLFFDIAQETTATGPVPTWWSHDGEAWQPLSV
DDGTDGLTRSGIVSFTLPTTMSATVLFSQTAFWLRIDNSHPWRTVRIAALAPNSVSAGNR
THVIDDVLGSSTERPSQSFQFSYSPVLAGQVVTVTEPRSLAPVDQSAAVAERSQALFAAS
SLAEDDSAQGASDAQPVTRVWTMVETFAYCGPGDRAYILDSANGLITFGDGRNGMIPPGG
HNNIVATYDTTQGLAGNVPAGTLTVLKPSIADISAVTNPAPARGGVDGDTVDHVDRTGPA
VLKANNRVVQLSDFGPLAAEASPQVCRARATDSPGHGIRLSVLAQAATPQPYADPALLTL
VQTYVRQRCLAPLAGGIEATNPDYRTVDVMAQVKSTCPSDQRNAVQDQLVQLLTDFLQPV
LGGTDGEGWAFGEAVTAAAIDRALRRSPLVESVLALTVDGRDNGSVVMTPTQVAAAGAIS
VLVYGA