Protein Info for AMB_RS09395 in Magnetospirillum magneticum AMB-1
Annotation: ABC transporter ATP-binding protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 51% identical to Y4187_BRUSU: Putative ATP-binding protein BRA1187/BS1330_II1178 (BRA1187) from Brucella suis biovar 1 (strain 1330)
KEGG orthology group: K02049, sulfonate/nitrate/taurine transport system ATP-binding protein (inferred from 100% identity to mag:amb1858)Predicted SEED Role
"Choline ABC transporter ATP-binding protein" in subsystem Choline Transport
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q2W663 at UniProt or InterPro
Protein Sequence (273 amino acids)
>AMB_RS09395 ABC transporter ATP-binding protein (Magnetospirillum magneticum AMB-1) MNALPNRRSLTVTRGRIGIQRLSVSFGAHAAVEDFSLEIEPGEFVCLLGPSGCGKSTALN AVAGFLRPARGRVAVDGVEVTGPGPERGMVFQQHSLFPWKTVLENVAFGPRMQGKTRAEA RDLAREYLDLVGLGGSAQRYPAALSGGMAQRVGIARALVNHPSVLLMDEPFGALDAQTRS IMQESLLRLWGQIGNTVLFVTHDIDEALFLADRVVVMSAAPGRVLLDLRLDLPRPRPEDV FATPQFAEHKRQCLRLIRQESRRAFDFIDGAGI