Protein Info for AMB_RS09325 in Magnetospirillum magneticum AMB-1

Annotation: cell envelope integrity protein CreD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 454 transmembrane" amino acids 22 to 44 (23 residues), see Phobius details amino acids 315 to 333 (19 residues), see Phobius details amino acids 339 to 359 (21 residues), see Phobius details amino acids 369 to 388 (20 residues), see Phobius details amino acids 394 to 412 (19 residues), see Phobius details amino acids 418 to 437 (20 residues), see Phobius details PF06123: CreD" amino acids 19 to 443 (425 residues), 383.5 bits, see alignment E=6.8e-119

Best Hits

KEGG orthology group: K06143, inner membrane protein (inferred from 100% identity to mag:amb1843)

Predicted SEED Role

"Inner membrane protein CreD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W678 at UniProt or InterPro

Protein Sequence (454 amino acids)

>AMB_RS09325 cell envelope integrity protein CreD (Magnetospirillum magneticum AMB-1)
MTDNPFPPPNPANPWTSPTRKIGMIAALLVASLIPGWMISSLVAERESRQMEMSRDFAQS
WGPEQTLTTPVLVVPYKPAADQPRHYLKIPSSQVTVTARLSPETRKRGLFSATVYSASVE
MQGSFRIPHQVRLAASMVNGSAGLLWQESFIILGSSKLAGMSSASLVVGSDQRIAWQNCW
EISATDEDCKGSESLLGKLSLASPPGAGTTLPFHIAANVRGTQSLSLLSQAQALSVTMSA
PWQTPSFSGSTLPLSSSLSEAGFEAQWQAVNYGAPQSWSSRQFADPGPSSATRIKVDLLD
PTPAYRMIHRASKYDALFLALSFATYFLFEALAKKRIHLVQYGLMGLSVTLFPLLLLSIA
EPLGYDRGFLLGALLVLTQASLYTGAVARRFRETALFAAMLALLFGFIYVLLSLETYSLL
AGSLALFAVLSLVMLLTRRIDWSSWNTPGKGTAP