Protein Info for AMB_RS08995 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 939 transmembrane" amino acids 768 to 791 (24 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1777)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W6E4 at UniProt or InterPro

Protein Sequence (939 amino acids)

>AMB_RS08995 hypothetical protein (Magnetospirillum magneticum AMB-1)
MHGISKQMAGEVTTEFARIRSVTPQMMADMARGMEGWVMITGEEAPAAARKLAQAISDPE
KFLQLLEKETHGVSAATMEMVARLVDANDVMQAKAVAAREFGEVMERAAAKMKTPFQQAA
LDAANALQDLAHAFAGSGEKGEGLAASMRTLAEVIRGLELPIAVVGKALRDLMDMITMVV
QAAMAGFAAMKTVAVVAAEAVVEFTRVIYQAVKGDLSEAQKAALDMPRKLAEEWGVRSAE
VKRHLDEIRAAMRDISEPYLPGHQTEKPNAPGGEKPAPTATGTVANESDREKLALEALNR
NLTIRRELRQIDGDRKILTEQLTALEGRMAGAAGETKAGLSAQVSDIKSALQELDERQEK
LTKKDGGETKMEGFRRELAELQAADKRSLDERKADDLKFWQAKQANLERGGKDYAQVTIE
IRRLEKAIAADAHNERLADLERQRAAAHKGSEERIILARREAEEVKRYAGEHSKAYQDSL
KRIEEMVKEHQKELDRIEADGLEARSSAKKADLETDAENLRFLRGLGVVDEHEQLARLRQ
IKEQEYQIERDALDQKLKLKSLEAAEKDRINKQIQQLDQGHRAQDLSATHQQTLAVLHDW
QTTSSGIGSAFGGAIKGMIVQGQTFQQAERNLALGLGNVFADLALRKIGTWIWSEGVMRA
WSKITGQQEVVDAAAKETAKTAATTAGQAARTSATVAGTAARNAAGATEQAGFFARIGEQ
IAQWLGLETAKTAETVAQAGAREGVESEAGIIAIAAAKAQALGEIPSYAAIGAAAAMASV
AAIPFVGWAMAPEVGAEHFAMAMAFLPMASAEGGWEHVPADGMITELHKDEKVLSAPFSR
RLDQLMNNVEVMQQPGAMALPMPGPPVLPMPSSAGTRPVPLAARMADALGGSGRDGDIHI
HAVDAASINNLMRRPGVARNTVDVMRAQAGQGNYVKRGK