Protein Info for AMB_RS08810 in Magnetospirillum magneticum AMB-1

Annotation: phage head protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 PF10124: Mu-like_gpT" amino acids 12 to 309 (298 residues), 403 bits, see alignment E=3.8e-125

Best Hits

Swiss-Prot: 38% identical to CAPSD_BPMU: Major capsid protein (T) from Escherichia phage Mu

KEGG orthology group: None (inferred from 100% identity to mag:amb1740)

Predicted SEED Role

"Phage major capsid protein" in subsystem Phage capsid proteins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W6I1 at UniProt or InterPro

Protein Sequence (309 amino acids)

>AMB_RS08810 phage head protein (Magnetospirillum magneticum AMB-1)
MLATRGGANLGDIFTGFNTAFNKGLGLAKPTISTVAMEVPSTTGEENYNWLGSFPMLREW
VGDRVIQSLSRWSFTIKNKNFEMTVKVPGNAIEDDQYGLFSPLMTEMGREAAIHPDRLGY
DLMKKGFSATCYDEKPFFSEEHPIDLTPNTVEPFSNMQAGNGTPWFLIDASRALRPLVYQ
KRRAYRFVSLTAPNDHNVFWQNEYVYGCDGRSNVGFGLWQLAFGSKAELNHDNFEAARAA
MTKMVGDGGRKLGITPTHLICPSELEGAARRVLKNENRIVIIDNNGVSAPVQVANEWKDA
AEILSTPYL