Protein Info for AMB_RS08615 in Magnetospirillum magneticum AMB-1

Annotation: flagellar motor protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details transmembrane" amino acids 108 to 128 (21 residues), see Phobius details amino acids 140 to 166 (27 residues), see Phobius details PF01706: FliG_C" amino acids 288 to 376 (89 residues), 54.8 bits, see alignment E=5.4e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1699)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W6M2 at UniProt or InterPro

Protein Sequence (398 amino acids)

>AMB_RS08615 flagellar motor protein (Magnetospirillum magneticum AMB-1)
MSGIASIRSLIREAPTRKAALALLLCLYDLWSLAKARGPLALEDHVVHPERSVILHQHRS
LARLPWLMEPLMDLVRHFTLGTEGSSAYDQMIDGIIAAEEQWMRTVHGLVMLLASVIAVF
WVIAMVIVRPPLVMEGSLSWPTVTVWIVPIGLAMLALHCIKVWIGWVASERTGMLEALRR
GICFHADGAFAPQVSADAARMALPQRLRPSHDQLEDVIRAESVRYLYPGAPLLLPADRAD
GQDCATAIQDMLDRLMPSDLNSFERDQRLDELLTDLADDVPPQFSAVALEFNRLKLLGED
DIRVLLHSVDKDIWSLALRGASSHTARSILDCISHRAGRLLMQDMQALDGATAVEILEAQ
RTIIKTLGNLRATGTLPDQATLDREFFAQISSLDSPLS