Protein Info for AMB_RS08600 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 635 transmembrane" amino acids 36 to 55 (20 residues), see Phobius details amino acids 93 to 117 (25 residues), see Phobius details amino acids 128 to 148 (21 residues), see Phobius details amino acids 195 to 216 (22 residues), see Phobius details amino acids 222 to 242 (21 residues), see Phobius details amino acids 259 to 282 (24 residues), see Phobius details amino acids 292 to 313 (22 residues), see Phobius details amino acids 383 to 403 (21 residues), see Phobius details amino acids 410 to 429 (20 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1696)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W6M5 at UniProt or InterPro

Protein Sequence (635 amino acids)

>AMB_RS08600 hypothetical protein (Magnetospirillum magneticum AMB-1)
MNPIVSALGRYHRIYGDFGAARAAAIIYMPLAAFKGWVDFVVIATFALTGWFAFVQPPQT
VTSQWRDFPPPIDRRFSLFPPDSPQSEWSRHHVWAAMMTANMVVSTWVALPLFLLWLWSG
DHRHWMDAWFVLVFFPFVGLVFDIMISGHGRSLAAARSTRRLTTTPSGEDVEEPTDNSSH
PSANTERQSAFSHPYLLYPLMTVPLIALIALILTGVFSDKLLHLLAAIIAFAYAMGLVVE
WSINGRQISAAMFLDAGTHAALVIVLCVVIGYGIPFVGLLAFKVFGHHGSRFAAGLAAIG
GHLTLTLAMHSAWRKGPEVGTRSGPSHAGQRFQAWQPGPSVAIALACHDRVFFAPPPPDI
GTVRAAYTSMRGDSSPLGLPPRLGYALLLGVAVTVPGWLLAPLAGLSDAALVALLPLSFC
YGMALGWFITDASETCVFVGSDGIWQCWFAADGPMPTSGFFFTNADAAYVSGTEVVSPRI
GGQPTGERYYEYSWVSLDGNRVHELKGHYHVRNYRESSLAELDDAALEAWTAHRHARYLE
DLASGHSALFPILCTSGTSSILLGSNGAELDENNVTVPIVATDIGNGTMTLTLQNDDVPR
LIPISSIGNFGCFRRIMADLKIGLGNHRPTEGADA