Protein Info for AMB_RS08505 in Magnetospirillum magneticum AMB-1

Annotation: cyclic nucleotide-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 871 PF00753: Lactamase_B" amino acids 249 to 313 (65 residues), 32.9 bits, see alignment 1.2e-11 PF12706: Lactamase_B_2" amino acids 255 to 357 (103 residues), 29.1 bits, see alignment E=1.5e-10 PF00027: cNMP_binding" amino acids 512 to 590 (79 residues), 32.9 bits, see alignment E=1e-11 amino acids 653 to 711 (59 residues), 28 bits, see alignment 3.6e-10 TIGR02481: hemerythrin-like metal-binding domain" amino acids 741 to 863 (123 residues), 108.4 bits, see alignment E=1.3e-35 PF01814: Hemerythrin" amino acids 749 to 859 (111 residues), 46.4 bits, see alignment E=1.1e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1682)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W6N9 at UniProt or InterPro

Protein Sequence (871 amino acids)

>AMB_RS08505 cyclic nucleotide-binding protein (Magnetospirillum magneticum AMB-1)
MPLLRKIEVTTGVWWIEAAQAGVSVLCGCPADAVKHLMKRGLIVSTEVNGVPFETGPNVI
LLSDAMVQNGSFSNLAEFPVLQMLYRQGMILPDHPGNTGIKPMLIGSADQVSAQMQYIYR
GNYGLVTEEEIVEAGETPERAREMMRMKLRFAFGNIRHPGDLLDTLVVDNEPVEIRNGVF
VRRMMFNVFEFTYQGQTAVVDLNLPSFETYESPYPLGFYRLRREYFAVIHSGEGDGWDIN
RPSMSSIVMFQGKVYLVDAGPNILYSLNALGIGVNEIEGIFHTHSHDDHFAGLTTLIRSD
HKLKYYSTPLVRASVAKKVAALLSIEEGAFSDYFDVRPLIEGEWNSIDGLEVMPVFSPHP
VETTVFHFRAMWEGGYRTYSHFADICRLSVLQGFVTDDPEAAGISQTMYDKVAADYLVPA
DVKKIDVGGGMIHGDAYDFRDDKSGKIILAHTSQRNTRAQKAIGSSASFGTVDVLIPSNH
DFIWPYAFEALDAYFPGIPRHQIRVLLNNPVVTFNPGTILVKERMVNDQIYLLLSGSVEM
IPIEIEMRSVLSAGALIGELSGLFGTPASETYRAASFVQALAIPCSLYLEFVRYNDVFSG
VSRLLENREFLLRTSLFGEVVSSKSLNRIAQGMKRQAVDADTVIEPGPGLVAMLKSGSAG
RFLAEHMFETLKPGDFFGEEVAIFGTPSLLRVRALEGCEVYLVPAETLRDIPSVRWKLFE
ASTKRTRAMVEAGEHARVLIKWHDEYSVGVQRIDSHHRRLFEIGNSVLDMMERKSPDAEV
AETMGLLREYARFHFSEEEGLLIRYKYPDLSSHRARHNRLLEQLTELQAAVAEGRGYNEA
EVLTFLQEWIVGHTLAEDRKSAIYLNSKGVY