Protein Info for AMB_RS08425 in Magnetospirillum magneticum AMB-1

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 419 transmembrane" amino acids 17 to 40 (24 residues), see Phobius details amino acids 59 to 77 (19 residues), see Phobius details amino acids 88 to 106 (19 residues), see Phobius details amino acids 112 to 135 (24 residues), see Phobius details amino acids 146 to 168 (23 residues), see Phobius details amino acids 179 to 199 (21 residues), see Phobius details amino acids 242 to 265 (24 residues), see Phobius details amino acids 277 to 296 (20 residues), see Phobius details amino acids 304 to 322 (19 residues), see Phobius details amino acids 328 to 352 (25 residues), see Phobius details amino acids 364 to 386 (23 residues), see Phobius details amino acids 392 to 413 (22 residues), see Phobius details PF07690: MFS_1" amino acids 30 to 323 (294 residues), 119.8 bits, see alignment E=1.9e-38 amino acids 244 to 417 (174 residues), 59.2 bits, see alignment E=5.4e-20 PF06779: MFS_4" amino acids 31 to 407 (377 residues), 117.5 bits, see alignment E=1.4e-37

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1665)

Predicted SEED Role

"Transporter, MFS superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W6Q6 at UniProt or InterPro

Protein Sequence (419 amino acids)

>AMB_RS08425 MFS transporter (Magnetospirillum magneticum AMB-1)
MTATSEHPLVRRLPFHYAWAIVAAGCIGLFAALGLGRFALGMLLPSMGQSLELSRSEMGW
ISTGNFIGYMAAVTLGGRMVARWGARNTVVAGLGLVALSMMAVSRAEGFLQVLALYVVTG
YGSGAANVPVMGLIAHWFGRRVRGRAAGFVVIGSGFAIMTAGVLIPAINAAHGAEGWRFA
WLVIGLMVLATALIDLLVLRNHPSELGLAPVTGAPAAGAGTPAPICAAAPSPSAKRRILA
HLGAVYAAFGFTYVIYATFIVTALVQERGFPESTAGMFWSWIGFLSLASGPVFGSLSDRI
GRRAGLMIVFSCQAAAYVLVALPLPEPFLYASIALFGLVVWAVPSIMAAAVGDYLGPEQA
ASSFGTITLIFALGQICGPAVAGWMADAWGSFSGAFAMAAAVAGLGVAGAAFLPNPKRH