Protein Info for AMB_RS08155 in Magnetospirillum magneticum AMB-1

Annotation: DUF4115 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 434 transmembrane" amino acids 44 to 62 (19 residues), see Phobius details amino acids 154 to 174 (21 residues), see Phobius details PF13413: HTH_25" amino acids 61 to 122 (62 residues), 77 bits, see alignment E=7.6e-26 PF13464: RodZ_C" amino acids 352 to 421 (70 residues), 64.1 bits, see alignment E=9.4e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1615)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W6V6 at UniProt or InterPro

Protein Sequence (434 amino acids)

>AMB_RS08155 DUF4115 domain-containing protein (Magnetospirillum magneticum AMB-1)
MRKGSSDVDSTATDPQTETPAEASEPVAAPETPPEPAPEPVVEIAASVAAALAVNAGVGA
TLRAAREGMGKTLPDCAKLLRIRQLYLEALEDGRHRDLPGGTYAAGFLRSYAEYLGLDSE
EMVRRFREEGAGGFKNRTELTFPSPVSEGRIPGGAVIFLGLILAAVAYGGWYLLSSSETK
VTEMVPPLPDRLAGVLNRQASLTGEAKTGDVAKPGDDKTKDEVVPPVEAEEDKPSAANPA
PAATEPAKVEAPKTEPAKIDAPKVEPPKVEAPKPEPAKVEPPKVEAPKPEPAKVEPPKVE
APKPEPAKVEAPKVEAPKAEPAKVEPPKAETPATAVADGKVYGTEYADSRVVLKATGDDC
WIQVREVDGSLLMSRLLRRGDSFRVPNRSGLSLMVGNAGSLEVNVDGRKVPALGAPGQVR
RDIRLDPDKLATGG