Protein Info for AMB_RS07810 in Magnetospirillum magneticum AMB-1

Annotation: DUF485 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 111 transmembrane" amino acids 33 to 55 (23 residues), see Phobius details amino acids 69 to 93 (25 residues), see Phobius details PF04341: DUF485" amino acids 20 to 108 (89 residues), 111.9 bits, see alignment E=6e-37

Best Hits

Swiss-Prot: 55% identical to YJCH_ECOLI: Inner membrane protein YjcH (yjcH) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 99% identity to mag:amb1545)

Predicted SEED Role

"Putative membrane protein, clustering with ActP" in subsystem Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W726 at UniProt or InterPro

Protein Sequence (111 amino acids)

>AMB_RS07810 DUF485 domain-containing protein (Magnetospirillum magneticum AMB-1)
MSSHNAPSAANLASAEHIRNNPKFRELVAKRNAFAWTLSAIMLIIYFGFILIIAFNKAWL
GTLLTSTGVMTIGFPIGVGVILSAIALTGIYVYRANGEFDEMNRQIIEESR