Protein Info for AMB_RS07470 in Magnetospirillum magneticum AMB-1

Annotation: amino acid synthesis family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 194 PF06684: AA_synth" amino acids 5 to 180 (176 residues), 253.4 bits, see alignment E=4.4e-80

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1479)

Predicted SEED Role

"FIG00440100: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W792 at UniProt or InterPro

Protein Sequence (194 amino acids)

>AMB_RS07470 amino acid synthesis family protein (Magnetospirillum magneticum AMB-1)
MSARIRKIVVVVEETRSEMGRPVEPPTRKAAAVAVIANPFAGTYQEDLSELIAMGEELGA
LLGQKAVEALGIAPAQVESYGKAAVVGENGELEHAAALLHPKLGAPLRKAVEKGAALVPS
SKKRGGMNAPIDIPLGHKDAAFVRSHFDAMEVRVPDAPRANEIVVAVAVTDSGRPLPRVG
GLTVSEIKGEDGLR