Protein Info for AMB_RS07460 in Magnetospirillum magneticum AMB-1

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 618 transmembrane" amino acids 6 to 30 (25 residues), see Phobius details amino acids 38 to 57 (20 residues), see Phobius details amino acids 64 to 88 (25 residues), see Phobius details amino acids 99 to 119 (21 residues), see Phobius details amino acids 146 to 164 (19 residues), see Phobius details amino acids 185 to 210 (26 residues), see Phobius details amino acids 230 to 252 (23 residues), see Phobius details amino acids 260 to 284 (25 residues), see Phobius details amino acids 314 to 334 (21 residues), see Phobius details amino acids 341 to 366 (26 residues), see Phobius details amino acids 382 to 407 (26 residues), see Phobius details amino acids 414 to 435 (22 residues), see Phobius details amino acids 457 to 477 (21 residues), see Phobius details amino acids 508 to 528 (21 residues), see Phobius details amino acids 547 to 568 (22 residues), see Phobius details amino acids 582 to 604 (23 residues), see Phobius details PF02653: BPD_transp_2" amino acids 8 to 279 (272 residues), 130.3 bits, see alignment E=3.9e-42 amino acids 335 to 593 (259 residues), 114.4 bits, see alignment E=2.8e-37

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein K01998, branched-chain amino acid transport system permease protein (inferred from 100% identity to mag:amb1477)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W794 at UniProt or InterPro

Protein Sequence (618 amino acids)

>AMB_RS07460 ABC transporter permease (Magnetospirillum magneticum AMB-1)
MSFFFIQFLNGLASASSLFLVASGLSIIFGVSRIVNFAHGSFYMLGAYMAFTLVQKLSGG
TVFGFWGAIVLAAAAVALVGAVVEMVLLRRIYQAPELLQLLATFGLVLIVQDLVLVLWGP
EDLLGPRAPGLKGAIDIFGQSFPQYDFVLIILGPVVLGLLWLLFHRTRWGTLIRAATQDR
EMVAALGVNQAWLFTSVFTLGAFLAGLGGAVQLPREAVNHVMDLQIITEAFVIVVIGGLG
SVLGAFLAAVIIGELNAFGILIFPQLTLVLTFLVMAVILVVRPWGLLGKPEMVMRGGGGV
ERPIRPLTQRGRNVAFAGLVVLLALPMVGGSYGLSVASEVLIFALFAASLHFMMGTGGMV
SFGHAAYFGLGSYGAALMVKYFGIPMLAALVTGPLLAAAAALVFGWFCVRLAGAYLAMLT
LAFAQIAYAVVFQWSSFTGGDNGLIGIWPAPWAANPVAFYYLTLALCGGGILAVRRITFA
PFGYTLRACRDSALRADSIGINLSSHRWAGFALAGFFAGIAGSLYAFLKGSVFPDTISIA
TSVDGLVMVLLGGVQTLTGPVVGALVYKTLHVTISSYTDQWRTALGVIIIVLVVAFPQGI
SGFVQGRLTRSEPKEDAA