Protein Info for AMB_RS07315 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 177 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF02563: Poly_export" amino acids 26 to 98 (73 residues), 75.2 bits, see alignment E=5.8e-25 PF22461: SLBB_2" amino acids 104 to 170 (67 residues), 28 bits, see alignment E=2.8e-10 PF10531: SLBB" amino acids 104 to 152 (49 residues), 39.2 bits, see alignment E=7.8e-14

Best Hits

KEGG orthology group: K01991, polysaccharide export outer membrane protein (inferred from 54% identity to ccr:CC_0169)

Predicted SEED Role

"Capsule polysaccharide export protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (177 amino acids)

>AMB_RS07315 hypothetical protein (Magnetospirillum magneticum AMB-1)
MRMRWLRIVAVLLVAGCSSVGWAADLAYVLGPNDKVKITVFGEPDLSGEFEIGGSGTLAM
PLVGEIPLGGKNLSQASGLLAERLRQGILRDPKVSVEVLNYRPFFILGEVNQPGSYPYVN
GMTVVNAAAIGGGFTYRADKKDIKITREGAQGKTEIKGQMESTVMPGDVIWVGERFF