Protein Info for AMB_RS07165 in Magnetospirillum magneticum AMB-1

Annotation: hemerythrin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 132 TIGR02481: hemerythrin-like metal-binding domain" amino acids 3 to 127 (125 residues), 106 bits, see alignment E=7e-35 PF01814: Hemerythrin" amino acids 11 to 128 (118 residues), 56.1 bits, see alignment E=2.8e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1415)

Predicted SEED Role

"COG2703: Hemerythrin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W7F6 at UniProt or InterPro

Protein Sequence (132 amino acids)

>AMB_RS07165 hemerythrin (Magnetospirillum magneticum AMB-1)
MPAWTESLSVGVPVLDEHHRHLFHLLATLDGMAGGSVGQDAVRSVFDDLNGYIAYHFAEE
EAMMARADFPFLELHRHSHQTIAMRVADMSAELSMANVERVIRELHDFLVGWLVHHIEIE
DFEYRPFLSGDK