Protein Info for AMB_RS07010 in Magnetospirillum magneticum AMB-1

Annotation: ATP-dependent helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 563 PF00270: DEAD" amino acids 42 to 209 (168 residues), 169.8 bits, see alignment E=6.9e-54 PF04851: ResIII" amino acids 62 to 203 (142 residues), 29.8 bits, see alignment E=7.9e-11 PF00271: Helicase_C" amino acids 246 to 354 (109 residues), 106.5 bits, see alignment E=1.4e-34

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1385)

Predicted SEED Role

"ATP-dependent RNA helicase Atu1833" in subsystem ATP-dependent RNA helicases, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W7I6 at UniProt or InterPro

Protein Sequence (563 amino acids)

>AMB_RS07010 ATP-dependent helicase (Magnetospirillum magneticum AMB-1)
MTTHDDIGRSDGPETATTTFEDLGLGPEILKALAESGYTHPTPIQAQAIPVVLMGRDVLG
CAQTGTGKTASFTLPMIEILAAGRAKARMPRSLILAPTRELAAQVAENFDKYGKYHPLKK
ALIIGGESMSDQVALLDRGVDVLIATPGRLLDMFERGRILLNDVKVLVIDEADRMLDMGF
IPDVEKIVGLLPKIRQTLFFSATMGPEIRRLADAFLMNPKEVKVSTGASAATTVVQALAV
VEEIDKRETLRHLIRIEEVKNAFIFCNRKRDVDVLFRSLKKHGFDVVQLHGDMAQSARGE
TLEKFKKGEARLMVCSDVAARGIDISAVSHVFNFDVPIHAEDYVHRIGRTGRAGMEGHAF
TIASPDDGRFVGAIEAMIGTTIPRISVEGVPALDLDMTARKGRGGRGAPKDAKRPARGKD
DEAKPRRERRPRRDEAPVAEAAPVEAAAPEEVIERPREERPERSRGRGRDREEPRRDEPR
REEPRRGGRNRDEGRRDERGGRRRGRIDELGIGEMLHPDGVIGFGDHMPDFIAAAVPLPV
KTSKSTVDDDSDADADLDADSED