Protein Info for AMB_RS06770 in Magnetospirillum magneticum AMB-1

Annotation: DUF983 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 151 transmembrane" amino acids 76 to 95 (20 residues), see Phobius details amino acids 105 to 122 (18 residues), see Phobius details PF06170: DUF983" amino acids 51 to 134 (84 residues), 100.9 bits, see alignment E=2.1e-33

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1333)

Predicted SEED Role

"Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W7N8 at UniProt or InterPro

Protein Sequence (151 amino acids)

>AMB_RS06770 DUF983 domain-containing protein (Magnetospirillum magneticum AMB-1)
MPHRLRVPVCKPAPPPADLPPEEGGGRPIALSIWRGARRLCPRCGVGMIMEGYLGIRAAC
PHCGERLGHIRADDGPAYFTVLVAGHVVVPLTLAAEQAWHPPLEVQMVVALSGLGLLIWR
LLPRMKGAVLGLMWAHGLKGDEVQGDVERHG