Protein Info for AMB_RS06655 in Magnetospirillum magneticum AMB-1

Annotation: spore maturation protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 411 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 42 to 63 (22 residues), see Phobius details amino acids 94 to 116 (23 residues), see Phobius details amino acids 137 to 157 (21 residues), see Phobius details amino acids 169 to 192 (24 residues), see Phobius details amino acids 212 to 233 (22 residues), see Phobius details amino acids 240 to 258 (19 residues), see Phobius details amino acids 278 to 300 (23 residues), see Phobius details amino acids 314 to 335 (22 residues), see Phobius details amino acids 350 to 373 (24 residues), see Phobius details amino acids 385 to 407 (23 residues), see Phobius details PF07670: Gate" amino acids 47 to 157 (111 residues), 45.6 bits, see alignment E=4.3e-16 amino acids 276 to 376 (101 residues), 36.1 bits, see alignment E=3.8e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1309)

Predicted SEED Role

"Spore maturation protein A-like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W7R2 at UniProt or InterPro

Protein Sequence (411 amino acids)

>AMB_RS06655 spore maturation protein (Magnetospirillum magneticum AMB-1)
MNAVFLVLVLVSFLVAAFAELSGGAGAMEALSAGLVDSVAGAVPLALGLVGIMALFLGLM
KVAEAGGLLDILARLLEPALRRLFPEIPAGHPAMGAMVMNVAANLLGLGNAATPFGIRAM
EHLESLNRDKGTASNAQVLFLAINTAGLTLLPTKVIALRAATGSAQPAAIVASTLIASLV
AALVGVLAARGLQGLWQPRMIETVPDQPAPASLWPCLLALAGLLAGAAALLAWGKVLGPW
ILPGLVVGLLLFGARRGVRLYESFVEGAKEGFDVAVRIIPYLVAILAAIGMVRASGAMDL
LIRPLGRLTEGLGLPAEALMMAAMRTLSGSGSYGMLASSLKDPAIGPDSYLGALLSTLYG
STETTFYVLAVYFGAVQVRRIRHALAVGLLADLAALIAAIIVCRLLFGGVS