Protein Info for AMB_RS06640 in Magnetospirillum magneticum AMB-1

Annotation: integral membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 161 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 55 to 79 (25 residues), see Phobius details amino acids 93 to 113 (21 residues), see Phobius details amino acids 137 to 159 (23 residues), see Phobius details PF13664: DUF4149" amino acids 18 to 113 (96 residues), 28 bits, see alignment E=1.1e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1306)

Predicted SEED Role

"Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W7R5 at UniProt or InterPro

Protein Sequence (161 amino acids)

>AMB_RS06640 integral membrane protein (Magnetospirillum magneticum AMB-1)
MEMLFDHAYAIAMALHTLAAVVWVGGMFFAHLILRPVMAERPAPERLAVWREVFPRFFFW
VWISILVLLVTGYSTLLLGFKAGFTGGPSHVDIMQLIGLVMMALYFQLFFGPWQGFKRAF
AAGDFPKAAEYQVRIRHIVTVNLILGMISIVVGVAGSLLGA