Protein Info for AMB_RS06540 in Magnetospirillum magneticum AMB-1

Annotation: elongation factor P

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 188 TIGR00038: translation elongation factor P" amino acids 3 to 185 (183 residues), 234.5 bits, see alignment E=3.5e-74 PF08207: EFP_N" amino acids 5 to 60 (56 residues), 72.3 bits, see alignment E=3.8e-24 PF01132: EFP" amino acids 69 to 122 (54 residues), 66.1 bits, see alignment E=3.3e-22 PF09285: Elong-fact-P_C" amino acids 130 to 185 (56 residues), 84.1 bits, see alignment E=6.4e-28

Best Hits

Swiss-Prot: 100% identical to EFP_MAGSA: Elongation factor P (efp) from Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)

KEGG orthology group: K02356, elongation factor P (inferred from 100% identity to mag:amb1285)

Predicted SEED Role

"Translation elongation factor P" in subsystem Translation elongation factors eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W7T6 at UniProt or InterPro

Protein Sequence (188 amino acids)

>AMB_RS06540 elongation factor P (Magnetospirillum magneticum AMB-1)
MKINANLIRPGNILEHNGRQYAVLKTQIVQPGKGGAFITVEMRDIRTGNKTNERWRTADT
IEKCNVEAKECTFLFKDDSNMTFMDSESFEQFTMPNDTLGDTIGFLQDGMVVEVDFVEGS
PVSITLPEKVVMKVVEADPVVKGQTASSSYKPAKLENGMKILVPPFLEEGEVIIVNTTDC
SYVERFKG