Protein Info for AMB_RS06490 in Magnetospirillum magneticum AMB-1

Annotation: tandem-95 repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1857 TIGR01965: VCBS repeat" amino acids 6 to 55 (50 residues), 43.6 bits, see alignment (E = 1.3e-15) amino acids 60 to 157 (98 residues), 86.8 bits, see alignment 4.6e-29 amino acids 646 to 732 (87 residues), 32.6 bits, see alignment 3.5e-12 amino acids 742 to 829 (88 residues), 36.7 bits, see alignment 1.9e-13 amino acids 1216 to 1286 (71 residues), 16.3 bits, see alignment (E = 4.3e-07) PF17803: Cadherin_4" amino acids 29 to 97 (69 residues), 35.8 bits, see alignment (E = 2.5e-12) amino acids 131 to 202 (72 residues), 50.6 bits, see alignment (E = 6e-17) amino acids 708 to 782 (75 residues), 30 bits, see alignment (E = 1.6e-10) PF17963: Big_9" amino acids 129 to 223 (95 residues), 54.2 bits, see alignment 5.1e-18 amino acids 503 to 594 (92 residues), 57.7 bits, see alignment 4e-19 amino acids 596 to 701 (106 residues), 32.6 bits, see alignment 2.6e-11 amino acids 707 to 804 (98 residues), 49 bits, see alignment 2.1e-16 amino acids 1163 to 1261 (99 residues), 34.3 bits, see alignment 8.1e-12 PF17892: Cadherin_5" amino acids 140 to 234 (95 residues), 107.8 bits, see alignment 5.1e-35 amino acids 537 to 606 (70 residues), 55.4 bits, see alignment (E = 1.2e-18) amino acids 717 to 816 (100 residues), 41.8 bits, see alignment 2e-14 amino acids 1277 to 1378 (102 residues), 50.8 bits, see alignment 3.2e-17 PF13448: DUF4114" amino acids 312 to 409 (98 residues), 30.9 bits, see alignment 1.1e-10 PF00353: HemolysinCabind" amino acids 848 to 867 (20 residues), 14.3 bits, see alignment (E = 8.1e-06) amino acids 961 to 986 (26 residues), 29.9 bits, see alignment (E = 1.1e-10) amino acids 1001 to 1018 (18 residues), 12.1 bits, see alignment (E = 4.1e-05) amino acids 1032 to 1052 (21 residues), 17.1 bits, see alignment (E = 1.1e-06) amino acids 1060 to 1091 (32 residues), 28.3 bits, see alignment (E = 3.5e-10) amino acids 1650 to 1674 (25 residues), 16 bits, see alignment (E = 2.4e-06) amino acids 1698 to 1714 (17 residues), 15.9 bits, see alignment (E = 2.6e-06) amino acids 1726 to 1750 (25 residues), 30 bits, see alignment (E = 1e-10) amino acids 1733 to 1767 (35 residues), 39.6 bits, see alignment (E = 1e-13)

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1277)

Predicted SEED Role

"bll3714; unknown protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W7U4 at UniProt or InterPro

Protein Sequence (1857 amino acids)

>AMB_RS06490 tandem-95 repeat protein (Magnetospirillum magneticum AMB-1)
MPTCRPLGAGESMTKTFAVASADGTATQNVTVTINGANDSATISGSTTGAVAEDGNGRAT
GTLSVADVDHGQAHVTAQTVQTDQGTFSIGENGQWTFQVNSANADVQALGAGESMTKTFA
VASADGTATQNVSVTITGSNDGPTVSGAVGLGHTAEDNSVTFTKAQLLANAHDTDAHDTL
SVSNLSAAHGSIVDNGNGTYTFTPTETFSGHVDVSYTVSDGHGGTTTGSAALDVDAVADR
ATVSVAIGAPVETPNGSFTVTNLDSTASAGYNNTYGYYVMDDSGNPTSGGVIWSNVHASP
GASVTISGVDPDRVGFFLIPDGGSQNSGLANGAALTFSKDASGNWQASDSAGHVLSGAGT
KVLFDKSALNGDHMVHSEDTSAVSGNQNWEDLTGGGDRDYNDVNMSVTWGNAAPTATHPL
TVSASFPDMDGSEGHAVKISGLPSGSTLYQNGVALVAGADGSYSLNPAQLGGLSVKTPAG
FNGDLNVNVTAVATDGTSVASSTASATVHDDLSNHGPDAGDATSVHGAMGATITGAAGVT
DSDGDHLSYAVGTGTSGPQHGTVVVNTDGTFTYTPSGNYSGTDTFKITVSDGHGGTATET
VNVTVENGAPTLTTANAATANDHSAVTGHVTGSDTPGDTLSYSLVDANGNHVGSLVTDHG
TVSINAATGDYTFTPNAANASLGVGASVTDSFKVVATDNHGADSNLGTVAVTVTGSNDGP
VVTGVTGGTGNESITSARSVVTGHISAGDVDAGDTLSYSVTDNAAAGHHGTLAVNASGDY
TFTASDSNWHGTDSFTVQVSDGHGGTVNQTVAITVNAQADAATINAQDASMAAQSGATFT
ASGGYAEGGSGSDIINGSSANDILYGDDPSGDTEVTVALNISAAAISGESVSSITLSNLP
GGAVLNHGHDNGDGTWTLAPGDLTGLTLTSNNGIGGTVDVAVTTLDGTSTAVTNSSFNVS
FSGGFNDTITGGVGADTMYGGAGNDTFKVSGASESTGDIYDGGSGTDTVLGSSGNDVISV
TSNLGNMRSIEVIDGGAGTDTLLAGSGNDYLDFSGTTIRGVEVIDTGAGNDVITGSAGAD
TILTGTGDDTVVAIGGQTAGDVYDGGAGTDTLNVDLTPAQYTTAVRLELMSFASFVDNPA
NAGKSFTFQSLGGLKATNFEDLRVTVDGNDVDLNHPPQVTSVESNYTAGHADGVVHATDS
DGDTMSYSFGTNTNGTPITSMATAHGTVTIDSSTGEYHFTASDANFKGTDTFSVTVKDGM
GGTTTQKVNLDFNPGDDATVVTGPTSLGGSDEDTQTFIRTDQLLANATDVDNTLHVANLS
AVDSHGAVVGSFVHAVDADGHDGYAFTPNANFAGDVTVNYDVVTDTGIATHTSGSLHVDA
VADAATFDATIGSNGVSVAHLGNDSKVVNLFVNDTSSGTAGFDIYLGGTNIGHYTVGRSY
SSDKSVSLTLTDAQHTQLLNGADIKIVDNDGYNTRDVLVDRIQVDGLTFQAENGILSGAS
TTSGYYGVSSETYARLNNVGSSVTFDFDSSVSHTSSGYHVDLAGHLNDTDGSETLSYHID
AMTTGASLSYTGNEGTLVHNTDGSWDFNVDASHYDGAVSLNLNVANGTAGFDVHVTANAT
ETSNLDVAGVGDTVHCDGAIGGAGAIPGITLVGNAGNDDIIGTNGNDLLLGGKGGATYRF
SGGGCGSGGGWSIVQSDTNDVISAGAGDDVIYGDARLVNGNIQITGSGNDVLDGGSGNDQ
IHGGAGNDTIIGGTGDDVMFGDQGNDTFLFDFGFGHDVVDGGRGSNWTDTLDLTHDNQIS
SVNIEGVSGWAVSVDAQGHHVAQATNGAHDANGTIVVTNHDGSQDTIEFHNVEKVVW