Protein Info for AMB_RS06340 in Magnetospirillum magneticum AMB-1

Annotation: efflux RND transporter periplasmic adaptor subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 518 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 134 to 152 (19 residues), see Phobius details PF16576: HlyD_D23" amino acids 217 to 423 (207 residues), 31.6 bits, see alignment E=1.1e-11 TIGR01730: efflux transporter, RND family, MFP subunit" amino acids 256 to 515 (260 residues), 101.7 bits, see alignment E=1.9e-33 PF13437: HlyD_3" amino acids 340 to 438 (99 residues), 42.5 bits, see alignment E=9.7e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1249)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W7X2 at UniProt or InterPro

Protein Sequence (518 amino acids)

>AMB_RS06340 efflux RND transporter periplasmic adaptor subunit (Magnetospirillum magneticum AMB-1)
MFARFLALAFWAALIPSVWAAQPATPGIGAEGDVFQVVLVPGTDGRTLLYLADLDGNAPV
AGAAIDAEAEGWSGKAVPAEGPGAYALAWAPPTAGADLTLVISAQGRDDLLLARGVAPLP
PPATPPAPVEHWRHWTGGAAIGAVLVVAAWLLGRRGAGTAVLLLVLAVPAARAHEGHDHA
ATAETPAAQPGALLVMAKPTQFLLGIRTQKVDSAESAETVRVVGRVVPDPAGFARVQPSQ
PARIVSDPEFPLPVPGQGVKRGQVIGVLEPTLSTLERSDKRASLYRVESEIAITERESSR
QEALKGLVATKLVEDTRTRLDQLRRERSQLLGTALGRELVRAPIDGVVTDVHVVPGEVVP
VDKAMIEIVDPTRVRVEAVIHDLALAGRIGAATAATKVLPDQAVALSLLGVSPRVDALDQ
GVHAIFAVSEAQARTLRIGMPVDVFLATGATRLRMAVPRSAIAEFGGRQVVFVRAAPETF
EARPIRVERMVGPLAEIEGVKTGEKVVIQGVEQLKALR