Protein Info for AMB_RS06330 in Magnetospirillum magneticum AMB-1

Annotation: cytochrome c

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 244 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF13442: Cytochrome_CBB3" amino acids 137 to 199 (63 residues), 26.4 bits, see alignment E=7e-10 PF00034: Cytochrom_C" amino acids 138 to 221 (84 residues), 37.9 bits, see alignment E=3.7e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1247)

Predicted SEED Role

"Cytochrome c family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W7X4 at UniProt or InterPro

Protein Sequence (244 amino acids)

>AMB_RS06330 cytochrome c (Magnetospirillum magneticum AMB-1)
MTAPKEISTMKTRLLTLALLLVVPSALAHGTMVAFFGGQIAESGDYRAEFAVRDGAIRVW
LRDHDDKPVKASGKATLLLNGQKLEADLAAKDDGLTAPVPVKAKDKLAAVLGLVVDGKPV
SVRFQQAEMVAPTVSGPAEAGRKTFEAVCATCHGGALRGTDNGPPLLHPFYALGSAHGDD
VILAAMNDGAKAHMWKFGDMPKPQGLKPGQDKEVLAYIRAVQAANGLGGAPATAAADPHA
GHGH