Protein Info for AMB_RS06300 in Magnetospirillum magneticum AMB-1

Annotation: phenylacetyl CoA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 922 PF00384: Molybdopterin" amino acids 74 to 629 (556 residues), 86.2 bits, see alignment E=2.4e-28 PF01568: Molydop_binding" amino acids 815 to 889 (75 residues), 38.4 bits, see alignment E=1.1e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1241)

MetaCyc: 62% identical to phenylacetyl-CoA:acceptor oxidoreductase subunit PadB (Thauera aromatica)
Phenylacetyl-CoA dehydrogenase. [EC: 1.17.5.1]

Predicted SEED Role

"Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)" in subsystem Anaerobic respiratory reductases (EC 1.8.99.-)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.17.5.1 or 1.8.99.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W7Y0 at UniProt or InterPro

Protein Sequence (922 amino acids)

>AMB_RS06300 phenylacetyl CoA (Magnetospirillum magneticum AMB-1)
MSAAPAGGGGKKVEKVQTYCYQCVAGPDLMTVKVVDGVATEIEPNFKAADTHPAEGKVCV
KAFGLIQKSYTPHRILTPMKRTNPKKGKDQDPGFVPISWDEAMGTIAERLNAIRAEGLLD
AQGYPKFAASFGGAGTPTQYMGSLTAFLSAWGPIDFGFGSGQGVKCYHSEHLYGEFWHRG
YVITPDTPRANYIISCGTNTEASSGVCGVYRHAEARARGAIRVQVEPHLSVTGACSAEWL
PIKPKTDAAFLMTLLNVLVFEAPRERLDLDFLRNTTSSPYLVGPDGWYLRDPETHKPLLW
DEKTGRAVPHDTPGAVPALEGRFTVPKAVTLGADEDRWEHTDVEGVTAFTKFIEHVKGYT
PAWGAKVCDVPEARIRKIANDFLDHACVGQTIEIDGQVMPYRPVAVVLGKTVNNGWGGAE
CCWARTMLAVLVGALEVPGGTVGTTIRINRPAANRLESFEGCLDGFMEYPFNPTDKDTWK
ANPIIRNAYKMLVPLVGNSSWSPALGPTQFSYMFLDEPQDQIPRATFPEFLLVYRTNPVI
SFWDTDRVASVVSRMPFVVCFAHTRDETNHFADILLPDATDLEGMQLIRIGGTKFQEQFW
KQQGFALRQPSVKPQGEARDFTDIATDLAVRTGLQEKYVAAINRGSHGVPLKGPNWDFSL
PVDKAPSLEEVWDASCRSASAELSDGAESQGLDWWKENGFRTIPFSETNWFLTPALKAKG
LRYELPYQERLTRIGRQLANRLKEAGITWWDHQLTEYRPLMEWHDFPGYWEQSVVEHGGK
VADFPFWVVTARSMQYAWGSNMHIPLMREVSGHIKGHDGVVMNPEAARKVGVKEGERIVV
TAPTGKSVAGRVVLSQGIRPDTILMMSQFDHWATPIAKDFDVPSMNRLTAMTMQLTDATG
SAADLSRVAIRKARADEQGRRS