Protein Info for AMB_RS05570 in Magnetospirillum magneticum AMB-1

Annotation: magnesium and cobalt transport protein CorA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 434 transmembrane" amino acids 367 to 386 (20 residues), see Phobius details amino acids 400 to 423 (24 residues), see Phobius details PF01544: CorA" amino acids 134 to 420 (287 residues), 113.3 bits, see alignment E=7.1e-37

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1094)

Predicted SEED Role

"Magnesium and cobalt transport protein CorA" in subsystem Campylobacter Iron Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W8C7 at UniProt or InterPro

Protein Sequence (434 amino acids)

>AMB_RS05570 magnesium and cobalt transport protein CorA (Magnetospirillum magneticum AMB-1)
MSLLAVTELLSKHKIIEDMLRAQATRRPELVETVVHNQHTAELRMLLSRLSAGEIGRSLE
SVSPDDARLLWRHVAQDRMNDVLWEVSSALGEHLAGNVEPQFLSGEVTACELVDGRMRII
QVVSRSEMEGLRPIWIDTLGASKSERGWLGRHFGLELPDPEDLTDLEVSARFYVEENGEL
HLHSNFLLDRDGQSRSVPVAFIVHADTLFTVRSEELPVFRLQRLRMRSQPGEVSDCKDLL
LALYGADIEYSADALEDTYETLRRVGRKVLSENISDSDAARILGNIAEEEDLNGRIRGNM
LDTQRAVSFLLRGRLLNTMQMEDAREIIRDIESLNTHTAFLFEKINFLMDATVGFININQ
NRRVSQLTVAGVVFMPLNVLAGIGGMSEFSMMTQGVPWPLSYGAFTAGMILVGWGTYTVL
KVFEARNAKRRAKA