Protein Info for AMB_RS05530 in Magnetospirillum magneticum AMB-1

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 transmembrane" amino acids 236 to 244 (9 residues), see Phobius details amino acids 249 to 273 (25 residues), see Phobius details amino acids 284 to 309 (26 residues), see Phobius details PF00535: Glycos_transf_2" amino acids 17 to 186 (170 residues), 89.4 bits, see alignment E=4e-29 PF10111: Glyco_tranf_2_2" amino acids 18 to 125 (108 residues), 29.8 bits, see alignment E=6.8e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1082)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W8D9 at UniProt or InterPro

Protein Sequence (348 amino acids)

>AMB_RS05530 glycosyltransferase (Magnetospirillum magneticum AMB-1)
MTKPGQVTMKKSNPSVSVVFSFFNEEDNIPELLRRCRQTLRAEQESGNISKYELIFVNDD
STDASERMLTEEAQREGDIKLVNMSRNFGNSSCIIAGFEHSRGDLVFYMDADLQDPPELM
AKMLAAWRADDEVEVVNTVRLSRAGESKIKLAITRLGYDILARTSSIRFIREAGDFKLLS
RKVVDHMLDMPESFPFTRGLVYYVGFKQENVYYHRESRHAGESKFFVLGPRVIHNFLFSA
LISFSSAPLVLSLLIGTVAALIGVSVMTYSIIQYFVVDGVTSGWTSLIAAVLFMGSAQLI
TTGINGFYINSIFIETKRRPRYIVKSTVGGPLDAPKAAEAAVPAKDGL