Protein Info for AMB_RS05120 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 542 PF00805: Pentapeptide" amino acids 30 to 51 (22 residues), 20.1 bits, see alignment (E = 5.9e-08) amino acids 51 to 88 (38 residues), 40.7 bits, see alignment 2e-14 amino acids 79 to 116 (38 residues), 40.9 bits, see alignment 1.7e-14 amino acids 109 to 144 (36 residues), 30.6 bits, see alignment 3e-11 amino acids 135 to 170 (36 residues), 39.3 bits, see alignment 5.4e-14 PF13599: Pentapeptide_4" amino acids 77 to 151 (75 residues), 32.8 bits, see alignment E=1.1e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0998)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W8M3 at UniProt or InterPro

Protein Sequence (542 amino acids)

>AMB_RS05120 hypothetical protein (Magnetospirillum magneticum AMB-1)
MGNVHHLQHLGQGAGDWNAWRQQEPDVRPDLTNANLRGANLAGMDLSGSLLSLANLRKAV
LSGANLRDCNLPRACLEDADLSGAKLQGANLAGATLLRANFSGANMRMANLAGANLAGKM
DLSGVDLTGANLAGAKLMGANFSGATLAGANLAGADARNANFTGADLTDAVTAGALLDGA
NMSGAVIRRTAGRPQTIVADLEPEPEQPLPRTVSERPQPVSVETFEAEGFEAPPVSVEAP
SNEIEPVFETQPEWDNSAQPELAEPEQESEPEPIDTLVDVPADIEPELEPEPEPEPELAA
VEEMAEDDDSAFDAPPMATAAPIPLAESQISDLLADSVQDEALSRLPVPVDDAVDEEPQD
SPFYTYETKELAILALYLDQVSRKTKAEKAMLLDLLVQYNRNFLGQDVSVPMTTSGNAIL
VGFGDPTNALRCGGLYISMLRDMQVESYVAINWSMATVRVDSEGSESDELIANSISPSAR
LMPVGVVGEVLVLEELYSNPLTQRDLFTFERVARKWKAANDTHGEGIDVICYSVRSKQPP
YP