Protein Info for AMB_RS04540 in Magnetospirillum magneticum AMB-1

Annotation: C4-dicarboxylate ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 687 transmembrane" amino acids 29 to 49 (21 residues), see Phobius details amino acids 54 to 73 (20 residues), see Phobius details amino acids 82 to 102 (21 residues), see Phobius details amino acids 114 to 131 (18 residues), see Phobius details amino acids 138 to 161 (24 residues), see Phobius details amino acids 181 to 204 (24 residues), see Phobius details amino acids 247 to 252 (6 residues), see Phobius details amino acids 284 to 304 (21 residues), see Phobius details amino acids 315 to 335 (21 residues), see Phobius details amino acids 354 to 374 (21 residues), see Phobius details amino acids 379 to 410 (32 residues), see Phobius details amino acids 416 to 439 (24 residues), see Phobius details amino acids 460 to 484 (25 residues), see Phobius details amino acids 492 to 516 (25 residues), see Phobius details amino acids 519 to 541 (23 residues), see Phobius details amino acids 546 to 568 (23 residues), see Phobius details amino acids 575 to 598 (24 residues), see Phobius details amino acids 613 to 636 (24 residues), see Phobius details amino acids 646 to 675 (30 residues), see Phobius details TIGR02123: TRAP transporter, 4TM/12TM fusion protein" amino acids 30 to 681 (652 residues), 680.9 bits, see alignment E=1e-208 PF06808: DctM" amino acids 123 to 389 (267 residues), 192.6 bits, see alignment E=5.3e-61 amino acids 409 to 602 (194 residues), 88 bits, see alignment E=3e-29

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0891)

Predicted SEED Role

"TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W8Y0 at UniProt or InterPro

Protein Sequence (687 amino acids)

>AMB_RS04540 C4-dicarboxylate ABC transporter (Magnetospirillum magneticum AMB-1)
MSQQDEKDVDLAEIDTKGEVFGHGVESRGIFWIAIAFSVFQIVTAAYSPLSSLPVRSIHV
GFLLLMVFALYAAMGRGNPVKVATAWALGGLSFILSLYHLIYEGELVQRSGDPSTTDLVV
GTVMVALVFEAARRLMGWALPALCLVFVAYAAFGEILPAPLGHRGYGFDQIINQYFLGTE
GIFGIPCYVSATYIFLFILFGSFLEQAGMIRLFTDVALGTVGHTKGGPAKVAVVTSGLMG
TINGSGIANVVTTGALTIPLMKRFGYRSEFAGAVEATASMGGQIMPPVMGAVAFIMAETL
NISYAEVCKAAAIPALLYYASAIWMVHLEAGIAGLHGMPKDQCPSAQGALRRQWYLMVPL
AALVYLLLAGFTPMFSGTVGLALTAIVILGSSIAANIGGMAGRVVFWGVLGIASSAFFKL
GINVVVVTVAVLVGVNFFVRGGRETMRMTVRGLVEGARSAVPVGVACTLVGTIIGTMTLT
GIAGSFTQGLVSMSGGSLFLTLILTMIASLILGMGIPTIPTYIITSSLVAPMLFKMGVPL
VVSHMYVFYFGILADLTPPVGLAAFAAASIARSNFFVTGWWAVRVAMAGFVVPFMAVYDP
SLMMVSGSLFDTAYVVIKALLAIGLWGAATIGYLWAPMKMWERAVAVLAAFLLVAAVPLT
DEIGFALSAVFLAWHWMRARRVAIQGA