Protein Info for AMB_RS04315 in Magnetospirillum magneticum AMB-1

Annotation: PAS domain S-box protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 846 signal peptide" amino acids 1 to 53 (53 residues), see Phobius details transmembrane" amino acids 215 to 234 (20 residues), see Phobius details amino acids 240 to 258 (19 residues), see Phobius details amino acids 277 to 297 (21 residues), see Phobius details amino acids 309 to 330 (22 residues), see Phobius details amino acids 332 to 352 (21 residues), see Phobius details amino acids 364 to 384 (21 residues), see Phobius details amino acids 396 to 417 (22 residues), see Phobius details PF07696: 7TMR-DISMED2" amino acids 67 to 199 (133 residues), 112.9 bits, see alignment E=4.8e-36 PF07695: 7TMR-DISM_7TM" amino acids 212 to 413 (202 residues), 86.5 bits, see alignment E=9.8e-28 TIGR00229: PAS domain S-box protein" amino acids 474 to 596 (123 residues), 38.2 bits, see alignment E=7.2e-14 PF00989: PAS" amino acids 479 to 584 (106 residues), 38.2 bits, see alignment E=5.1e-13 PF13426: PAS_9" amino acids 490 to 587 (98 residues), 35.7 bits, see alignment E=3.5e-12 PF00512: HisKA" amino acids 617 to 679 (63 residues), 41.6 bits, see alignment 4.1e-14 PF02518: HATPase_c" amino acids 726 to 833 (108 residues), 95.5 bits, see alignment E=1.1e-30

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0847)

Predicted SEED Role

"Signal transduction histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W924 at UniProt or InterPro

Protein Sequence (846 amino acids)

>AMB_RS04315 PAS domain S-box protein (Magnetospirillum magneticum AMB-1)
MQPLRSGLLRCTGSRRCDREGKALGLWGRMRFAAVLAIILWAGLASGPAAVAATPLSPET
TEQSLAGHWSVLRDPSGQLEIKDVIGAAAGGFSPLEGDLAAGYDRASWWMRAEIRRSADT
PADWLLEVEPAYLDFVTLYIEDGKGGFHVAMAGDRVPFTAREVAYRTLVFRLHLADDLPH
RVYLKVKSTSTITVSARLLSPAGFALGAARRDLAQGFAHGVLIIIILFAVVQYSAGRDRL
YLSFLACAVPLECMHLARGGFASQYLFPQLPLVADHLLGVSLCLSIGGAVIFAARVLDLE
VYFPRLERIYMMIGRSCQWAALSVPAGIYWLVAPMVVSTVIAFFAVTSILAVRRVMDGDV
FTRWYLFAVQIPVMANVAIVSRTLGFAPMPMELDLFAHLGAGVHLLLIGSGLVWRGAAIE
ASRQRARQAQLESAQQIERALEERVRQRTQELAQSNAALATEIAERRAAEDRVREREGQL
RAILDAAPFPMVVASFPEGRVMFLNEPACELLNVSQDRAIGQQASDFYSDADERRTLIDQ
LGLSGAVLGVEMRVRRMPGVERWVLLSAVRFVYNGQDSTLVCLNDITTRKDLENMLRLSG
RRAEAALEAERQAMREQRNFLAMVSHEFRVPLAIIEAASQLLGIYLRANDDARDEVSKIR
RAVRRMSELIDVCLADDRLDSSAMRLQLDRVDVARMLSDICDDKRPFAGYRDLIIQAPQR
AMAMVDPTLLRIAFSNLIDNALKFSPADSPVTILVTADSDAVRVRVCDQGPGIALDEQPR
IFEKFYRSTKSDRVRGAGLGLYIVKRIMDLHGAAISVDSQGGAGTIFDVWLPDGVGEQPN
ELILTR