Protein Info for AMB_RS04310 in Magnetospirillum magneticum AMB-1

Annotation: receptor protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 647 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF00593: TonB_dep_Rec" amino acids 136 to 611 (476 residues), 49.2 bits, see alignment E=3.8e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0846)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W925 at UniProt or InterPro

Protein Sequence (647 amino acids)

>AMB_RS04310 receptor protein (Magnetospirillum magneticum AMB-1)
MRRGRHPRQILLRGLPVLVAMGALAESAPAAEPPKLLPDQSFIDTRYMGRHAGQDLPPTI
PLTDLPVAEPLMPAKTAWPTEFFAQRRAVAAAGNVALTGGFQGNGVVSTEAGLANTELGD
ASLWAGARHDHVKPYEDGAGQRVNYGYDRINTQLAAAWRPAPKSRLSGFVMRDAFSHHRI
PNYGIDATRLDRYLASTVFEHAPTDSALNRVEAGLVFDALSYDADNTSLRDRGSLGLKYN
GLWTTARGLVRGEFATGSFRNTVTADFGLLKYNIDIDALYPAQGQAVHRMPDVQTLQGGL
TFATATKLSPQDSLSAALRLDAIHSDPNERSQLPPVSGSGASSFQVTPQQLWNRYYGGNV
DSNPTNLNVSGRILVAHDTEDRTGRLHADLRRAVRSPDAGERFYANSGPTALTQVGNPQL
NPEAHHRFELGARQDGGGFKGNFAPGNPTGSWRVAVSGYGDRVVDFITADRARGQTGIAR
SDGAIIYRNVDAYLAGTALEAWWQVSEGWGARAKLSWTRGENLTDSRPLYQIPPLDGEMV
IEHRRELAPDTVGSAGARLSFAASQNRIDAYSSTGSAEDTAGGTAGWALLDLFAGVALGE
RAALTAGIANVLDKHYHLHVNPLPQSPTTKLQWAPGRSAFVQATVSF