Protein Info for AMB_RS04180 in Magnetospirillum magneticum AMB-1

Annotation: circularly permuted type 2 ATP-grasp protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 491 PF04174: CP_ATPgrasp_1" amino acids 89 to 420 (332 residues), 491.9 bits, see alignment E=8.3e-152 PF14403: CP_ATPgrasp_2" amino acids 89 to 464 (376 residues), 525.8 bits, see alignment E=6.1e-162

Best Hits

Swiss-Prot: 51% identical to Y335_SYNY3: Uncharacterized protein sll0335 (sll0335) from Synechocystis sp. (strain PCC 6803 / Kazusa)

KEGG orthology group: None (inferred from 100% identity to mag:amb0818)

Predicted SEED Role

"Protein containing domains DUF404, DUF407"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W953 at UniProt or InterPro

Protein Sequence (491 amino acids)

>AMB_RS04180 circularly permuted type 2 ATP-grasp protein (Magnetospirillum magneticum AMB-1)
MTRPRLTLPEPGLLSGYDPAEFFCEALSLRGDGEAELAAIAARLNALDPEDLRHRAARAE
KELFDLGITFTVYSDKDAIDRILPFDVLPRVITAGEWSRLEAGIIQRVTAINLFLADLYG
DQKILADKIVPADLVLGNANFHAFMRGLKVPCGTYSHVCGIDLIRDQEGLFRVLEDNART
PSGVSYVVENRNLMLQCFPDLMEDTRVRAVDDYGLMLRRALEEIAPAGVDEPSVVLLSPG
IYNSAFFEHVFLAREMGVPLVEGRDLVVENDRVYMLTTAGKAPVHSIYRRIDDFFLDPKV
FRPDSMLGVPGLMDAYRKGNVSLANAPGTGVADDKAVYAYMPRVIKYYLGEDAILPNVET
FICREAEGLKYTLDNLEHLVVKPVGESGGYGMILGPKASRSEIDEFRAKLKADPANYISQ
PMIGLSVSPTLTTKGTQPRHVDFRPFAVTGASTKVLAGGLTRVAMKEGSLVVNSSQGGGS
KDTWVLAGEGQ