Protein Info for AMB_RS03885 in Magnetospirillum magneticum AMB-1

Annotation: pentapeptide repeat-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 164 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF13599: Pentapeptide_4" amino acids 32 to 107 (76 residues), 28.7 bits, see alignment E=1.9e-10 PF00805: Pentapeptide" amino acids 35 to 68 (34 residues), 22.9 bits, see alignment 7.5e-09 amino acids 57 to 93 (37 residues), 17.5 bits, see alignment 3.9e-07 amino acids 93 to 130 (38 residues), 47.2 bits, see alignment 1.8e-16 amino acids 121 to 146 (26 residues), 22 bits, see alignment 1.5e-08

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0758)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W9B3 at UniProt or InterPro

Protein Sequence (164 amino acids)

>AMB_RS03885 pentapeptide repeat-containing protein (Magnetospirillum magneticum AMB-1)
MRLVLILAVFALIRPVEALAADCTQPAAPGVDWQRCYMDGRDFSRHDLSGARLRETSFQR
ARLDGTVLAKVDGYRVRFISAALVGARLDDGVFSEADFTKADLGGASLARADLRRARFYH
ASLRGADLTGARTLGAELLNADLSGARWTDGKTICAEGSLGQCN