Protein Info for AMB_RS03515 in Magnetospirillum magneticum AMB-1

Annotation: DUF115 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 666 transmembrane" amino acids 590 to 608 (19 residues), see Phobius details PF20157: Maf_flag10_N" amino acids 13 to 235 (223 residues), 190.7 bits, see alignment E=2.7e-60 PF01973: MptE-like" amino acids 259 to 419 (161 residues), 102.9 bits, see alignment E=1.7e-33

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0685)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W9I6 at UniProt or InterPro

Protein Sequence (666 amino acids)

>AMB_RS03515 DUF115 domain-containing protein (Magnetospirillum magneticum AMB-1)
MAAAPQINAELVSAYLEAFLELMPEMGERLRVHRPQSNLVVNEDGDLDVEFRGEFLYGPG
GRKRIEDMATRTALGPDHRISAAPLSSGHVDLIVKRFLYNILKRATDSGLSFLQHPEESG
GFHMVCLGLGLGYQLPILLEQDNPAGIHIVEPNFDFLYHSLSTVDWRPLLETRRENPLRL
NIIIEEEPGQIARQLRSAIRCCCPIVVDWTRLFVAYNSPLLTAAMSEFMRDAQLIGIGLG
FLHDEMEMTRASYKNMRDGRYSILQHSATQLHTPVFIVGSGPSIDDDIEVIKANQDRAVI
ISCGTASRVLLANGIQPDFQMLLENGAAPYRALAAVHEEFGFGSATLIGSNTVDPRVRDL
FEDVVYYFRPALSSYALFSPGIEYSLDDSGPTVTNTGTTAALALGFRELYLFGVDLGSRN
PKRHHSKQSLYRHADDTKDGQKGAMDFDAVFDVREPGNFGGVVYSETIMLWTRDALGRII
GRYRPAANAFNCSDGVMIENTRPLSSQSLRLKSTPDMKAKDLAKVRASFRPGGEELFHDR
WDREDWPRSIVTLLGECAQAMDDHVGDSNRLMLVLSEMLLRDYKQPPTVAQFFVRGTLMM
AAMCYDYYVKRVTPADRKAEFWEIIRDEFHQMIRVMTLQVEWYFDNIEAFESDEELFDKV
TGWDYD