Protein Info for AMB_RS03160 in Magnetospirillum magneticum AMB-1

Annotation: flagellar protein FhlB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 117 PF01312: Bac_export_2" amino acids 27 to 100 (74 residues), 56.7 bits, see alignment E=1.2e-19

Best Hits

KEGG orthology group: K04061, flagellar biosynthesis protein (inferred from 100% identity to mag:amb0613)

Predicted SEED Role

"Flagellar biosynthetic protein flhB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W9Q8 at UniProt or InterPro

Protein Sequence (117 amino acids)

>AMB_RS03160 flagellar protein FhlB (Magnetospirillum magneticum AMB-1)
MGDRDIWDEEAESERAKAAAAPRRRQVAVALADDPDHPGLPTVTASGRGAVAEQILQLAF
AHGVKVRTDPDLAEVLAAVEVDTVIPVEAFVAVAEILAYVYRANGAMGAAPPPGGAA