Protein Info for AMB_RS02870 in Magnetospirillum magneticum AMB-1

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 586 transmembrane" amino acids 32 to 52 (21 residues), see Phobius details amino acids 218 to 237 (20 residues), see Phobius details PF08269: dCache_2" amino acids 48 to 212 (165 residues), 124.2 bits, see alignment E=1.6e-39 PF17200: sCache_2" amino acids 59 to 209 (151 residues), 142.6 bits, see alignment E=2.5e-45 PF17201: Cache_3-Cache_2" amino acids 110 to 206 (97 residues), 32.8 bits, see alignment E=1.2e-11 PF00672: HAMP" amino acids 231 to 283 (53 residues), 49.6 bits, see alignment 1e-16 PF00015: MCPsignal" amino acids 389 to 543 (155 residues), 110.4 bits, see alignment E=2.3e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0554)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W9W7 at UniProt or InterPro

Protein Sequence (586 amino acids)

>AMB_RS02870 methyl-accepting chemotaxis protein (Magnetospirillum magneticum AMB-1)
MAKWPLPGGCRPSRNRKTEVAMGGLKLGIGGKIWALVALLVAGLGLLAVQSLSSTHETLI
EDRRQALKQVLDSSASVVESFRARAAKGEFSEEQGKRLAMETLRAWRYGNNDYVFINSYD
MRPLMHPLRPEMEGQDQSEMKDPNGVYVTRAMIEVARSPAGAGFTSYHWARVKDKPPVPK
LVYVINYKPWNWVLGTGVYIDDIDEAYAAKALDLGTKAALLGVLAAVIAVLIARSITGPL
GQLVSRMRALAEGDIERQVEGTGRKDEIGALARAMEVFRGNARENRRLLDEQEQLKLAAA
QERNRTLRDMAEGLERRVKSAVDAINNVGQRLNGASSAMTQTADQTSEQTGAVVAATQQT
STNVQTVASAAEELSASGNEISRQVSLTADIARAAAEEASQTNGMVAALAAAAGRIGEVV
QLIDAIAGQTNLLALNATIEAARAGEAGKGFAVVAGEVKTLANQTAKATQEITTQIAAVQ
TETTRAVAAIRHIGETITRVDEATSSIASAVEEQNAAIHEITRSVQEAARGTREVTEHIS
RVSDGARTSKSAAEEVAGSAREMVTQNGTLTREIDGFLREIRTQAS