Protein Info for AMB_RS02825 in Magnetospirillum magneticum AMB-1

Annotation: phasin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 145 PF09361: Phasin_2" amino acids 29 to 128 (100 residues), 83.9 bits, see alignment E=4e-28 TIGR01841: phasin family protein" amino acids 49 to 136 (88 residues), 102 bits, see alignment E=9.5e-34

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0546)

Predicted SEED Role

"COG0840: Methyl-accepting chemotaxis protein" in subsystem CBSS-343509.6.peg.2644

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W9X5 at UniProt or InterPro

Protein Sequence (145 amino acids)

>AMB_RS02825 phasin (Magnetospirillum magneticum AMB-1)
MAAKQTEQFFDFDVAKYLGDFKVPGVDVETIVANQRKNIEALTQANKLAFEGLQNVVKRQ
VEILRQTMDEVAQVSKDFAEPGSPQDKAAKQAEFAKDAFERALANARELAEMIAKANSEA
FDLLNKRFTQSLDEAREVFTKAGKK