Protein Info for AMB_RS02725 in Magnetospirillum magneticum AMB-1

Annotation: phospholipid carrier-dependent glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 520 transmembrane" amino acids 33 to 55 (23 residues), see Phobius details amino acids 74 to 92 (19 residues), see Phobius details amino acids 98 to 116 (19 residues), see Phobius details amino acids 127 to 148 (22 residues), see Phobius details amino acids 154 to 169 (16 residues), see Phobius details amino acids 176 to 208 (33 residues), see Phobius details amino acids 220 to 239 (20 residues), see Phobius details amino acids 268 to 295 (28 residues), see Phobius details amino acids 302 to 322 (21 residues), see Phobius details amino acids 333 to 352 (20 residues), see Phobius details amino acids 358 to 378 (21 residues), see Phobius details PF13231: PMT_2" amino acids 76 to 237 (162 residues), 127.9 bits, see alignment E=4.4e-41 PF02366: PMT" amino acids 81 to 228 (148 residues), 30.3 bits, see alignment E=3.2e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0530)

Predicted SEED Role

"Bll5638 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W9Z2 at UniProt or InterPro

Protein Sequence (520 amino acids)

>AMB_RS02725 phospholipid carrier-dependent glycosyltransferase (Magnetospirillum magneticum AMB-1)
MLLARRRSFPQAEFPVAPDAESHRAPSVGTRDAALLAGLVLAAALLHLWLTGTTLLSGDE
AYYWLWSRRLQLSYYDHPAMMAWWMAGATALFGESEAAIRLPAVLSVAAVTGLAFDTARL
AFRDIRAGWWAVAVLNATLLFAAAGVLVTPDSPLLVFWSLSLWAMVRLLDDGRARWLYLL
GLSLGLGFCSKYTMVLIAPGIMAVFALFPQARRWLKSPHFWAAIVLALACTSPVLIWNAQ
HDWISIKKQLSHSFDAPVSDPLKSLATFVGTQLGVITPLIFGFMLWGMGWTLWAGWRSRQ
PAWFLLGATSAPLLAFFVRHSLGGVVQPHWPGPAYLGAAIATSGAWVVLAPSWRRLRWLW
HGAIALGGLLVAATYVQMETARLPIPLKSDPMSRLGGWDQLASAVEAERTRHPDAFVFTT
KHEVAGLLTYYLPGHPVVFLTGSAGFPRIPSYDARDAAALPGQNGLYVIKDGFYAVQDVR
RSFRSLTLLATVDRAWGGKVVDHYEIWLAESYGSGTFENK